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51 <br />As recently determined by the United States Supreme Court in Solid Waste Agency of Northern <br />Cook County v. U.S. Army Corps of Engineers (the SWANCC decision), channels and wetlands <br />isolated from other jurisdictional waters cannot be considered jurisdictional on the basis of their <br />use, hypothetical or observed, by migratory birds. However, the U.S Supreme Court decisions <br />Rapanos v. United States and Carabell v. U.S. Army Corps of Engineers impose a "significant <br />nexus" test for federal jurisdiction over wetlands. In June 2007, the USACE and Environmental <br />Protection Agency (EPA) established guidelines for applying the significant nexus standard. <br />This standard includes 1) a case-by-case analysis of the flow characteristics and functions of the <br />tributary or wetland to determine if they significantly affect the chemical, physical, and <br />biological integrity of downstream navigable waters and 2) consideration of hydrologic and <br />ecologic factors (EPA and USACE 2007). <br />The USACE regulates the filling or grading of such waters under the authority of Section 404 of <br />the Clean Water Act. The extent of jurisdiction within drainage channels is defined by “ordinary <br />high water marks” on opposing channel banks. Wetlands are habitats with soils that are <br />intermittently or permanently saturated, or inundated. The resulting anaerobic conditions select <br />for plant species known as hydrophytes that show a high degree of fidelity to such soils. <br />Wetlands are identified by the presence of hydrophytic vegetation, hydric soils (soils saturated <br />intermittently or permanently saturated by water), and wetland hydrology according to <br />methodologies outlined in the 1987 Corps of Engineers Wetlands Delineation Manual (USACE <br />1987). <br />All activities that involve the discharge of fill into jurisdictional waters are subject to the permit <br />requirements of the USACE (Wetland Training Institute, Inc. 1991). Such permits are typically <br />issued on the condition that the applicant agrees to provide mitigation that result in no net loss of <br />wetland functions or values. No permit can be issued until the Regional Water Quality Control <br />Board (RWQCB) issues a certification (or waiver of such certification) that the proposed activity <br />will meet state water quality standards. The filling of isolated wetlands, over which the USACE <br />has disclaimed jurisdiction under the SWANCC decision, is regulated by the RWQCB. It is <br />unlawful to fill isolated wetlands without filing a Notice of Intent with the RWQCB. The <br />RWQCB is also responsible for enforcing National Pollution Discharge Elimination System